TRANSFAC® Release 7.0 - Documentation

Cell: Contents

This table gives short explanations for the 1307 cellular sources of proteins that interact with the sites listed in the SITE table. Among them may be defined cell lines, tissues / organs, even whole organisms, or recombinant expression systems.

Fields

AC   Accession no.
XX
DT   Date; author
XX
SO   Factor source
XX
OS   Species
XX
CD   Cell description
XX
BS   Site detected with this factor source
XX
DR   CLDB: accession no.;
XX
DR   TRANSCOMPEL: accession no.;
XX
//

The terminology of the factor sources (SO) corresponds to that used in
the SITE table. Cell lines are given with their most common name
(e.g., HeLa, 3T3), the most frequently used tissues may be abbreviated
(e.g., rl for rat liver), others are explicitly mentioned. Recombinant
materials are explained by the denotation rec([source organism] -
 [expressing cell]). Occasionally, a viral expression system is also
indicated:
rec(chick-baculovirus-Sf9).
In this table, no OC line is given since this kind of information is obscure in too many cases.

 

   
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