Transcription Factor Classification
Last modified 2002-10-01

1 Superclass: Basic Domains

2 Superclass: Zinc-coordinating DNA-binding domains

    2.1 Class: Cys4 zinc finger of nuclear receptor type.
      2.1.1 Family: Steroid hormone receptors
        2.1.1.1 Subfamily: Corticoid receptors
          2.1.1.1.1 GR (rat); GR (mouse); GR (human).
            2.1.1.1.1.1 GR a
            2.1.1.1.1.2 GR b
          2.1.1.1.2 MR (rat); MR (human).
        2.1.1.2 Subfamily: Progesterone receptor
          2.1.1.2.1 PR (human); PR (rabbit); PR (chick).
            2.1.1.2.1.1 PR-B
            2.1.1.2.1.2 PR-A
        2.1.1.3 Subfamily: Androgen receptor
          2.1.1.3.1 AR (human); AR (mouse); AR (rat).
            2.1.1.3.1.1 AR-A
            2.1.1.3.1.2 AR-B
        2.1.1.4 Subfamily: Estrogen receptor
          2.1.1.4.1 ER (rat); ER (mouse); ER (human); ER (clawed frog); ER (chick).
            2.1.1.4.1.1 ER (h) / ER-A (X)
            2.1.1.4.1.2 ER (482 AA) (h)
            2.1.1.4.1.3 ER-B (X)
      2.1.2 Family: Thyroid hormone receptor-like factors
    2.2 Class: diverse Cys4 zinc fingers.
      2.2.1 Family: GATA-Factors
        2.2.1.1 Subfamily: vertebral GATA-Factors 2.2.1.2 Subfamily: fungal metabolic regulators
          2.2.1.2.1 AREA / NIT-2 (Neurospora crassa).
          2.2.1.2.2 GLN3
          2.2.1.2.3 UGA 43
          2.2.1.2.4 NTL 1
      2.2.2 Family: Trithorax
          2.2.2.0.1 Ttx (fruit fly).
          2.2.2.0.2 Hrx
      2.2.0 Family: Other factors
          2.2.0.0.1 BUF2
    2.3 Class: Cys2His2 zinc finger domain.
      2.3.1 Family: Ubiquitous factors
          2.3.1.0.1 TFIIIA
          2.3.1.0.2 Sp1 (mouse); Sp1 (rat); Sp1 (human).
          2.3.1.0.3 Sp3
          2.3.1.0.4 Sp4
          2.3.1.0.5 YY1 (human).
      2.3.2 Family: Developmental / cell cycle regulators
        2.3.2.1 Subfamily: Egr/Krox 2.3.2.2 Subfamily: Krueppel-like
          2.3.2.2.1 Krueppel (fruit fly).
          2.3.2.2.2 Hunchback (fruit fly).
          2.3.2.2.3 Glass (fruit fly).
          2.3.2.2.4 Odd-skipped (fruit fly).
          2.3.2.2.5 Ovo (fruit fly).
          2.3.2.2.6 Snail (fruit fly).
          2.3.2.2.7 CF2
            2.3.2.2.7.1 CF2-I (fruit fly).
            2.3.2.2.7.2 CF2-II (fruit fly).
            2.3.2.2.7.3 CF2-III (fruit fly).
          2.3.2.2.8 Evi-1 (mouse).
          2.3.2.2.9 Ikaros (mouse).
          2.3.2.2.10 MZF-1 (human).
          2.3.2.2.11 Sdc-1 (Caenorhabditis elegans).
          2.3.2.2.12 NRSF
            2.3.2.2.12.1 NRSF form 1
            2.3.2.2.12.2 NRSF form 2
          2.3.2.2.13 Gfi-1
        2.3.2.3 Subfamily: GLI-like
          2.3.2.3.1 GLI (human).
          2.3.2.3.2 GLI3 (human).
          2.3.2.3.3 WT1
            2.3.2.3.3.1 WT1 +KTS (human).
            2.3.2.3.3.2 WT1 -KTS (human).
            2.3.2.3.3.3 WT1 I
            2.3.2.3.3.4 WT1 I -KTS
            2.3.2.3.3.5 WT1-del2
            2.3.2.3.3.6 WT1-del2 I
          2.3.2.3.4 Tra-1 2.3.2.3.5 RME1 (yeast).
          2.3.2.3.6 BrlA (Aspergillus nidulans).
        2.3.2.0 Subfamily: Others
      2.3.3 Family: Metabolic regulators in fungi
          2.3.3.0.1 ACE2 (yeast).
          2.3.3.0.2 ADR1 (yeast).
          2.3.3.0.3 MIG1 (yeast).
          2.3.3.0.4 CreA (Aspergillus nidulans).
          2.3.3.0.5 MSN2 (yeast).
          2.3.3.0.6 MSN4 (yeast).
      2.3.4 Family: Large factors with NF-6B-like binding properties 2.3.5 Family: Viral regulators
          2.3.5.0.1 T-Ag (SV40).
    2.4 Class: Cys6 cysteine-zinc cluster.
      2.4.1 Family: Metabolic regulators in fungi
          2.4.1.0.1 ARG RII (yeast).
          2.4.1.0.2 CAT8
          2.4.1.0.3 GAL4 (yeast).
          2.4.1.0.4 HAP1 (yeast).
          2.4.1.0.5 MAL63 (yeast).
          2.4.1.0.6 LEU3 (yeast).
          2.4.1.0.7 UGA3
          2.4.1.0.8 qa-1F (Neurospora crassa).
          2.4.1.0.9 UME6 (yeast).
          2.4.1.0.10 AmdR (Aspergillus nidulans).
          2.4.1.0.11 PUT3
    2.5 Class: Zinc fingers of alternating composition
      2.5.1 Family: Cx7Hx8Cx4C zinc fingers
          2.5.1.0.1 BAF1 (yeast).
      2.5.2 Family: Cx2Hx4Hx4C zinc fingers
          2.5.2.0.1 Byr3 (fission yeast).

3 Superclass: Helix-turn-helix

    3.1 Class: Homeo domain.
      3.1.1 Family: Homeo domain only
        3.1.1.1 Subfamily: AbdB 3.1.1.2 Subfamily: Antp
          3.1.1.2.1 abd-A (fruit fly).
          3.1.1.2.2 Antp (fruit fly).
            3.1.1.2.2.1
            3.1.1.2.2.2
          3.1.1.2.3 Ceh-15
          3.1.1.2.4 Dfd (fruit fly).
          3.1.1.2.5 Flh (zebra fish); Flh (clawed frog).
          3.1.1.2.6 Ftz (fruit fly).
          3.1.1.2.7 HOXA2 (mouse); HOXA2 (rat); HOXA2 (chick).
          3.1.1.2.8 HOXB2
          3.1.1.2.9 HOXA3 (mouse).
          3.1.1.2.10 HOXB3 (chick); HOXB3 (human); HOXB3 (mouse); HOXB3 (clawed frog).
            3.1.1.2.10.1 (m)
            3.1.1.2.10.2 (m)
          3.1.1.2.11 HOXD3
          3.1.1.2.12 HOXA4 (chick); HOXA4 (mouse); HOXA4 (human).
          3.1.1.2.13 HOXB4 (chick); HOXB4 (human); HOXB4 (mouse); HOXB4 (clawed frog).
          3.1.1.2.14 HOXC4
          3.1.1.2.15 HOXD4 (human); HOXD4 (mouse); HOXD4 (chick).
          3.1.1.2.16 HOXA5 (mouse); HOXA5 (human).
          3.1.1.2.17 HOXB5 (human); HOXB5 (mouse).
          3.1.1.2.18 HOXC5 (human).
          3.1.1.2.19 HOXA6
          3.1.1.2.20 HOXB6 (human); HOXB6 (mouse).
            3.1.1.2.20.1
            3.1.1.2.20.2
          3.1.1.2.21 HOXC6 (human); HOXC6 (mouse); HOXC6 (mouse); HOXC6 (clawed frog); HOXC6 (clawed frog); HOXC6 (zebra fish).
          3.1.1.2.22 HOXA7 (mouse); HOXA7 (clawed frog); HOXA7 (human); HOXA7 (quail); HOXA7 (rat).
            3.1.1.2.22.1 (X.l.)
            3.1.1.2.22.2 (X.l.)
          3.1.1.2.23 HOXB7 (human); HOXB7 (mouse); HOXB7 (clawed frog).
          3.1.1.2.24 HOXB8 (chick); HOXB8 (mouse).
          3.1.1.2.25 HOXC8 (mouse).
          3.1.1.2.26 HOXD8 (mouse); HOXD8 (chick).
          3.1.1.2.27 IPF1 (mouse); IPF1 (rat).
          3.1.1.2.28 Mab-5
          3.1.1.2.29 NK-1
          3.1.1.2.30 Pb (fruit fly); Pb (fruit fly).
            3.1.1.2.30.1
            3.1.1.2.30.2
            3.1.1.2.30.3
            3.1.1.2.30.4
          3.1.1.2.31 Scr (fruit fly).
          3.1.1.2.32 Ubx (fruit fly); Ubx (fruit fly); Ubx (fruit fly).
            3.1.1.2.32.1
            3.1.1.2.32.2
            3.1.1.2.32.3
            3.1.1.2.32.4
          3.1.1.2.33 Zen-1 (fruit fly).
          3.1.1.2.34 Zen-2 (fruit fly).
        3.1.1.3 Subfamily: Cad 3.1.1.4 Subfamily: Cut
          3.1.1.4.1 CDP (human).
          3.1.1.4.2 Cut (fruit fly).
        3.1.1.5 Subfamily: Dll
          3.1.1.5.1 Dll (fruit fly).
          3.1.1.5.2 Dlx-1 (mouse); Dlx-1 (clawed frog).
        3.1.1.6 Subfamily: Ems
          3.1.1.6.1 Ems (fruit fly).
          3.1.1.6.2 EMX1 (human); EMX1 (mouse).
          3.1.1.6.3 EMX2 (human); EMX2 (mouse).
        3.1.1.7 Subfamily: En
          3.1.1.7.1 En (fruit fly).
          3.1.1.7.2 En-1 (chick); En-1 (human); En-1 (mouse).
          3.1.1.7.3 En-2 (chick); En-2 (human); En-2 (mouse).
        3.1.1.8 Subfamily: Eve 3.1.1.9 Subfamily: Prd
          3.1.1.9.1 al
          3.1.1.9.2 Alx3
          3.1.1.9.3 Gsc (chick); Gsc (mouse); Gsc (clawed frog); Gsc (clawed frog).
          3.1.1.9.4 K-2 (human).
            3.1.1.9.4.1 K-2a (mouse).
            3.1.1.9.4.2 K-2b (mouse).
          3.1.1.9.5 S8 (mouse); S8 (chick).
          3.1.1.9.6 Otd (fruit fly).
          3.1.1.9.7 Otx1 (human); Otx1 (mouse); Otx1 (rat).
          3.1.1.9.8 Otx2 (human); Otx2 (mouse).
          3.1.1.9.9 Phox-2 (mouse).
          3.1.1.9.10 Unc-4
        3.1.1.10 Subfamily: HD-ZIP
          3.1.1.10.1 HAT1
          3.1.1.10.2 HAT2
          3.1.1.10.3 HAT3
          3.1.1.10.4 HAT4
          3.1.1.10.5 HAT7
          3.1.1.10.6 HAT9
          3.1.1.10.7 HAT14
          3.1.1.10.8 HAT22
          3.1.1.10.9 Athb-1 (thale cress).
          3.1.1.10.10 Athb-2 (thale cress).
          3.1.1.10.11 Athb-3
          3.1.1.10.12 Athb-4
        3.1.1.11 Subfamily: H2.0 3.1.1.12 Subfamily: HNF1 3.1.1.13 Subfamily: Lab
          3.1.1.13.1 HOXA1 (human); HOXA1 (mouse); HOXA1 (clawed frog).
            3.1.1.13.1.1 ERA-1-993
            3.1.1.13.1.2 ERA-1-399
          3.1.1.13.2 HOXB1 (chick); HOXB1 (human); HOXB1 (mouse); HOXB1 (clawed frog).
          3.1.1.13.3 HOXD1 (mouse).
          3.1.1.13.4 Lab (fruit fly); Lab (fruit fly).
            3.1.1.13.4.1 Lab (635 AA)
            3.1.1.13.4.2 Lab (629 AA)
        3.1.1.14 Subfamily: Msh 3.1.1.15 Subfamily: NK-2
          3.1.1.15.1 NK-2
          3.1.1.15.2 NK-3
          3.1.1.15.3 NK-4
          3.1.1.15.4 Nkx-2.2 (mouse).
          3.1.1.15.5 Nkx-2.5 (mouse).
          3.1.1.15.6 Nkx-6.1
          3.1.1.15.7 Tinman
          3.1.1.15.8 TTF-1 (rat); TTF-1 (human); TTF-1 (chick); TTF-1 (mouse); TTF-1 (cattle).
        3.1.1.16 Subfamily: Bcd
          3.1.1.16.1 Bcd (fruit fly).
        3.1.1.17 Subfamily: XANF
          3.1.1.17.1 Hesx1/XANF-1
        3.1.1.18 Subfamily: PBC
          3.1.1.18.1 Ceh-20
          3.1.1.18.2 Exd (fruit fly).
          3.1.1.18.3 MATa1 (yeast).
          3.1.1.18.4 Pbx1
          3.1.1.18.5 Pbx2
          3.1.1.18.6 Pbx3
            3.1.1.18.6.1 Pbx3a
            3.1.1.18.6.2 Pbx3b
        3.1.1.0 Subfamily: not assigned
          3.1.1.0.1 Gtx (mouse).
          3.1.1.0.2 KN1 (maize).
          3.1.1.0.3 Knox3 (barley).
          3.1.1.0.4 MATalpha1 (yeast).
          3.1.1.0.5 MATalpha2 (yeast).
          3.1.1.0.6 Pc (fission yeast).
          3.1.1.0.7 PHO2 (yeast).
          3.1.1.0.8 Prh (chick); Prh (human).
          3.1.1.0.9 Ro (fruit fly).
          3.1.1.0.10 Zeste (fruit fly).
          3.1.1.0.11 Zmhox1a (maize).
          3.1.1.0.12 HAT24
          3.1.1.0.13 Unc-30
          3.1.1.0.14 HB9
          3.1.1.0.15 BarH1
          3.1.1.0.16 BarH2
          3.1.1.0.17 Aalpha Y1
          3.1.1.0.18 Aalpha Y2
          3.1.1.0.19 Aalpha Y3
          3.1.1.0.20 alpha2-1
          3.1.1.0.21 beta2-1
          3.1.1.0.22 d1-1
      3.1.2 Family: POU domain factors 3.1.3 Family: Homeo domain with LIM region
        3.1.3.1 Subfamily: Homeo domain with LIM region
          3.1.3.1.1 Lin-11 (Caenorhabditis elegans).
          3.1.3.1.2 Isl-1 (rat).
          3.1.3.1.3 Lmx-1 (golden hamster).
          3.1.3.1.4 Lim-1 (chick); Lim-1 (human); Lim-1 (mouse); Lim-1 (clawed frog).
          3.1.3.1.5 Lim-3 (clawed frog); Lim-3 (mouse); Lim-3 (chick).
            3.1.3.1.5.1
            3.1.3.1.5.2
            3.1.3.1.5.3
          3.1.3.1.6 LH-2 (rat); LH-2 (human); LH-2 (chick); LH-2 (mouse).
          3.1.3.1.7 Ap (fruit fly).
          3.1.3.1.8 Mec-3 (Caenorhabditis elegans).
          3.1.3.1.9 Isl-2
          3.1.3.1.10 Lim-2
          3.1.3.1.11 Lmx2
        3.1.3.2 Subfamily: LIM-only transcription (co-)factors
          3.1.3.2.1 MLP (rat).
          3.1.3.2.2 DMLP1 (fruit fly).
      3.1.4 Family: homeo domain plus zinc finger motifs
          3.1.4.0.1 ATBF1 3.1.4.0.2 Zfh1 (fruit fly).
          3.1.4.0.3 Zfh2 (fruit fly).
    3.2 Class: Paired box.
      3.2.1 Family: Paired plus homeo domain
          3.2.1.0.1 Prd (fruit fly).
          3.2.1.0.2 Pax-3 (human); Pax-3 (mouse).
          3.2.1.0.3 Pax-6 (mouse); Pax-6 (zebra fish); Pax-6 (human).
          3.2.1.0.4 Pax-7 (human).
          3.2.1.0.5 Gsb (fruit fly).
          3.2.1.0.6 Gsbn (fruit fly).
      3.2.2 Family: Paired domain only
          3.2.2.0.1 Pax-1 (human); Pax-1 (mouse).
          3.2.2.0.2 Pax-2 (mouse).
            3.2.2.0.2.1 Pax-2a
            3.2.2.0.2.2 Pax-2b
          3.2.2.0.3 Pax-5 (human); Pax-5 (mouse).
          3.2.2.0.4 Pax-8 (rat).
          3.2.2.0.5 Poxn
    3.3 Class: Fork head / winged helix.
      3.3.1 Family: Developmental regulators
          3.3.1.0.1 Fkh (fruit fly).
          3.3.1.0.2 Slp1 (fruit fly).
          3.3.1.0.3 Slp2 (fruit fly).
          3.3.1.0.4 lin-31 (Caenorhabditis elegans).
          3.3.1.0.5 XFD-1 (clawed frog).
          3.3.1.0.6 BF-1 (rat); BF-1 (human); BF-1 (mouse).
          3.3.1.0.7 v-Qin (ASV 31).
          3.3.1.0.8 c-Qin (chick).
          3.3.1.0.9 Axial (zebra fish).
          3.3.1.0.10 Croc (fruit fly).
          3.3.1.0.11 Whn (mouse).
      3.3.2 Family: Tissue-specific regulators 3.3.3 Family: Cell-cycle controlling factors
        3.3.3.1 Subfamily: E2F 3.3.3.2 Subfamily: DP
          3.3.3.2.1 DP-1 (human); DP-1 (mouse).
          3.3.3.2.2 DP-2 (human).
          3.3.3.2.3 DP-3 (mouse).
          3.3.3.2.4 dDP (fruit fly).
      3.3.0 Family: Other regulators
          3.3.0.0.1 ILF (human).
          3.3.0.0.2 FKHR
          3.3.0.0.3 HTLF
          3.3.0.0.4 QRF-1
          3.3.0.0.5 HCM1 (yeast).
          3.3.0.0.6 FD1
          3.3.0.0.7 FD2
          3.3.0.0.8 FD3
          3.3.0.0.9 FD4
          3.3.0.0.10 FD5
          3.3.0.0.11 HFH-1
          3.3.0.0.12 HFH-2 (rat).
          3.3.0.0.13 HFH-3
          3.3.0.0.14 HFH-4
          3.3.0.0.15 HFH-5
          3.3.0.0.16 HFH-6
          3.3.0.0.17 HFH-7
          3.3.0.0.18 HFH-B2
          3.3.0.0.19 HFH-B3
          3.3.0.0.20 Fkh-1
          3.3.0.0.21 Fkh-2
          3.3.0.0.22 Fkh-3
          3.3.0.0.23 Fkh-4
          3.3.0.0.24 Fkh-5
          3.3.0.0.25 Fkh-6 (mouse).
          3.3.0.0.26 BF-2 (human); BF-2 (mouse).
    3.4 Class: Heat shock factors 3.5 Class: Tryptophan clusters.
      3.5.1 Family: Myb
        3.5.1.1 Subfamily: Myb-factors 3.5.1.2 Subfamily: Myb-like factors
          3.5.1.2.1 BAS1 (yeast).
          3.5.1.2.2 REB1 (yeast); REB1 (yeast).
          3.5.1.2.3 FlbD (Aspergillus nidulans).
          3.5.1.2.4 Adf-1 (fruit fly).
          3.5.1.2.5 RAP1 (yeast).
      3.5.2 Family: Ets-type
          3.5.2.0.1 c-Ets-1 3.5.2.0.2 Ets-2 (human); Ets-2 (chick); Ets-2 (mouse).
          3.5.2.0.3 v-Ets (E26 AEV).
          3.5.2.0.4 PEA3 (mouse); PEA3 (human).
          3.5.2.0.5 Elk-1 (human).
          3.5.2.0.6 SAP-1
            3.5.2.0.6.1 SAP-1a (human).
            3.5.2.0.6.2 SAP-1b
          3.5.2.0.7 SAP-2 (mouse); SAP-2 (human).
          3.5.2.0.8 Erg-1
            3.5.2.0.8.1 Erg-1 (human).
            3.5.2.0.8.2 Erg-2 (human).
            3.5.2.0.8.3 p38erg (human).
            3.5.2.0.8.4 p55erg
            3.5.2.0.8.5 p49erg
          3.5.2.0.9 Fli-1 (mouse).
            3.5.2.0.9.1 Fli-1a
            3.5.2.0.9.2 Fli-1b
          3.5.2.0.10 PU.1 (mouse).
          3.5.2.0.11 Spi-B (human).
          3.5.2.0.12 E4TF1-60 / GABP-alpha (mouse); E4TF1-60 / GABP-alpha (human).
          3.5.2.0.13 Elf-1 (human).
          3.5.2.0.14 Tel (human).
          3.5.2.0.15 E74
            3.5.2.0.15.1 E74A (fruit fly).
            3.5.2.0.15.2 E74B (fruit fly).
          3.5.2.0.16 yan (fruit fly).
          3.5.2.0.17 Pnt
            3.5.2.0.17.1 P1 (fruit fly).
            3.5.2.0.17.2 P2 (fruit fly).
          3.5.2.0.18 Elg (fruit fly).
          3.5.2.0.19 D-Ets-3
          3.5.2.0.20 D-Ets-4
          3.5.2.0.21 D-Ets-6
          3.5.2.0.22 N-Ets-3
          3.5.2.0.23 ER71
          3.5.2.0.24 ER81
      3.5.3 Family: Interferon-regulating factors
    3.6 Class: TEA domain.
      3.6.1 Family: TEA
          3.6.1.0.1 TEF-1 (human).
          3.6.1.0.2 Sd (fruit fly).
          3.6.1.0.3 TEC1 (yeast).
          3.6.1.0.4 abaA (Aspergillus nidulans).

4 Superclass: beta-Scaffold Factors with Minor Groove Contacts

    4.1 Class: RHR (Rel homology region). 4.2 Class: STAT
      4.2.1 Family: STAT
    4.3 Class: p53
      4.3.1 Family: p53
          4.3.1.0.1 p53
            4.3.1.0.1.1 p53 (human); p53 (mouse).
            4.3.1.0.1.2 p53as (mouse).
    4.4 Class: MADS box.
      4.4.1 Family: Regulators of differentiation
        4.4.1.1 Subfamily: MEF-2 4.4.1.2 Subfamily: homeotic genes
          4.4.1.2.1 AG (thale cress); AG (rape).
          4.4.1.2.2 AP1 (thale cress).
          4.4.1.2.3 DEF A/AP3/GP (garden snapdragon); DEF A/AP3/GP (thale cress); DEF A/AP3/GP (Petunia hybrida).
          4.4.1.2.4 GLO (garden snapdragon); GLO (tobacco).
          4.4.1.2.5 NMH7 (alfalfa).
          4.4.1.2.6 ZEM
            4.4.1.2.6.1 ZEM1 (maize).
            4.4.1.2.6.2 ZEM2 (maize).
            4.4.1.2.6.3 ZEM3
            4.4.1.2.6.4 ZEM4
            4.4.1.2.6.5 ZEM5
          4.4.1.2.7 PI
          4.4.1.2.8 PMADS3
          4.4.1.2.9 Fbp2
          4.4.1.2.10 Fbp3
          4.4.1.2.11 AGL1
          4.4.1.2.12 AGL2
          4.4.1.2.13 AGL3
          4.4.1.2.14 AGL4
          4.4.1.2.15 AGL5
          4.4.1.2.16 AGL6
          4.4.1.2.17 SQA
          4.4.1.2.18 O-MADS
          4.4.1.2.19 TAG1
          4.4.1.2.20 TDR3
          4.4.1.2.21 TDR4
          4.4.1.2.22 TDR5
          4.4.1.2.23 TDR6
          4.4.1.2.24 NAG1
          4.4.1.2.25 Tobmads1
          4.4.1.2.26 MADS1
        4.4.1.3 Subfamily: yeast regulators
          4.4.1.3.1 MCM1 (yeast).
          4.4.1.3.2 YBR182C
      4.4.2 Family: Responders to external signals
          4.4.2.0.1 SRF (clawed frog); SRF (human); SRF (mouse); SRF (rat).
          4.4.2.0.2 RLM1 (yeast).
      4.4.3 Family: Metabolic regulators
    4.5 Class: beta-Barrel alpha-helix transcription factors
      4.5.1 Family: E2
          4.5.1.0.1 E2 (BPV-1).
          4.5.1.0.2 EBNA-1
    4.6 Class: TATA-binding proteins
      4.6.1 Family: TBP
          4.6.1.0.1 TBP (human); TBP (fission yeast); TBP (mouse); TBP (fruit fly); TBP (yeast); TBP (thale cress); TBP (thale cress).
    4.7 Class: HMG.
      4.7.1 Family: SOX
          4.7.1.0.1 SRY (mouse); SRY (human).
          4.7.1.0.2 Sox-2 (mouse); Sox-2 (chick).
          4.7.1.0.3 Sox-4 (human); Sox-4 (mouse).
          4.7.1.0.4 Sox-5 (mouse); Sox-5 (human).
          4.7.1.0.5 Sox-9 (human); Sox-9 (mouse).
          4.7.1.0.6 Sox-18 (mouse).
          4.7.1.0.7 SOX-LZ (mouse); SOX-LZ (rainbow trout).
          4.7.1.0.8 Sox-8
          4.7.1.0.9 Sox-10
          4.7.1.0.10 Sox-11
          4.7.1.0.11 Sox-12
          4.7.1.0.12 Sox-13
          4.7.1.0.13 Sox-14
          4.7.1.0.14 Sox-15
          4.7.1.0.15 Sox-16
      4.7.2 Family: TCF-1
          4.7.2.0.1 TCF-1alpha 4.7.2.0.2 TCF-1 (human).
            4.7.2.0.2.1 TCF-1A (human).
            4.7.2.0.2.2 TCF-1B (human).
            4.7.2.0.2.3 TCF-1C (human).
            4.7.2.0.2.4 TCF-1D (human).
            4.7.2.0.2.5 TCF-1E (human).
            4.7.2.0.2.6 TCF-1F (human).
            4.7.2.0.2.7 TCF-1G (human).
            4.7.2.0.2.8 TCF-1P
          4.7.2.0.3 TCF-3 (mouse).
          4.7.2.0.4 TCF-4
      4.7.3 Family: HMG2-related 4.7.4 Family: UBF
          4.7.4.0.1 UBF
            4.7.4.0.1.1 UBF1 / xUBF2
            4.7.4.0.1.2 UBF2
          4.7.4.0.2 xUBF1
      4.7.5 Family: MATA
          4.7.5.0.1 mat-Mc (fission yeast).
      4.7.0 Family: Other HMG box factors
    4.8 Class: Heteromeric CCAAT factors
      4.8.1 Family: Heteromeric CCAAT factors
          4.8.1.0.1 CP1A (rat); CP1A (human); CP1A (mouse).
          4.8.1.0.2 CP1B (rat); CP1B (mouse).
            4.8.1.0.2.1 CP1B
            4.8.1.0.2.2 CP1B
            4.8.1.0.2.3 CP1B
            4.8.1.0.2.4 CP1B
          4.8.1.0.3 CBF-C (rat).
    4.9 Class: Grainyhead 4.10 Class: Cold-shock domain factors. 4.11 Class: Runt.

0 Superclass: Other Transcription Factors

    0.1 Class: Copper fist proteins
      0.1.1 Family: Fungal regulators
    0.2 Class: HMGI(Y)
      0.2.1 Family: HMGI(Y)
    0.3 Class: Pocket domain
      0.3.1 Family: Rb
          0.3.1.0.1 Rb (human); Rb (mouse); Rb (mink); Rb (monkey).
          0.3.1.0.2 p107 (human).
      0.3.2 Family: CBP
          0.3.2.0.1 CBP (mouse).
    0.4 Class: E1A-like factors
      0.4.1 Family: E1A
          0.4.1.0.1 E1A
            0.4.1.0.1.1 E1A 12S (adenovirus).
            0.4.1.0.1.2 E1A 13S (adenovirus type 2).
    0.5 Class: AP2/EREBP-related factors
      0.5.1 Family: AP2
          0.5.1.0.1 AP2 (thale cress).
          0.5.1.0.2 ANT (thale cress).
          0.5.1.0.3 Gl15 (maize).
          0.5.1.0.4 IDS1 (maize).
      0.5.2 Family: EREBP
          0.5.2.0.1 ABI4 (thale cress).
          0.5.2.0.2 CBF1/DREB1B (thale cress).
          0.5.2.0.3 DREB1A (thale cress).
          0.5.2.0.4 DREB1C (thale cress).
          0.5.2.0.5 DREB2A (thale cress).
          0.5.2.0.6 DREB2B (thale cress).
          0.5.2.0.7 EBP (thale cress).
          0.5.2.0.8 EREBP-1 (tobacco).
          0.5.2.0.9 EREBP-2 (tobacco).
          0.5.2.0.10 EREBP-3 (tobacco).
          0.5.2.0.11 EREBP-4 (tobacco).
          0.5.2.0.12 ERF1 (thale cress).
          0.5.2.0.13 RAP2.5 (thale cress).
          0.5.2.0.14 TINY (thale cress).
      0.5.3 Family: AP2/B3
          0.5.3.0.1 RAV1 (thale cress).
          0.5.3.0.2 RAV2 (thale cress).

 

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